Collects bismark alignment reports
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
align_report{:bash}
:file
Bismark alignment reports
*{report.txt}
dedup_report{:bash}
Bismark deduplication reports
*.{deduplication_report.txt}
splitting_report{:bash}
Bismark splitting reports
*{splitting_report.txt}
mbias{:bash}
Text file containing methylation bias information
*.{txt}
report{:bash}
*report.{html,txt}{:bash}
Bismark reports
*.{html,txt}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Bismark is a tool to map bisulfite treated sequencing reads and perform methylation calling in a quick and easy-to-use fashion.
