Description

Run NanoPlot on nanopore-sequenced reads

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

ontfile{:bash}

:file

ONT file

Output

name:type
description
pattern

html{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.html{:bash}

:file

NanoPlot report

*{.html}

png{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.png{:bash}

:file

Plots generated by NanoPlot

*{.png}

txt{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.txt{:bash}

:file

Stats from NanoPlot

*{.txt}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

nanoplot
GPL-3.0-or-later

NanoPlot is a tool for plotting long-read sequencing data and alignment.